Merge branch 'master' of gitlab.com:matteodelabre/wikimedica-disease-search
This commit is contained in:
commit
95d1fd31cc
GPG Key ID:
AE3FBD02DC583ABB
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@ -1,6 +1,7 @@
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from fetch import wikidata, wikimedica
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import requests
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import rdflib
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import json
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SIGNES_ET_SYMPTOMES_WIKIMEDICA_PAGE = (
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'http://wikimedi.ca/wiki/Sp%C3%A9cial:'
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@ -22,10 +23,10 @@ nb_multi_align_possibility = 0
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# get name and URI from WikiMedica
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request_name_uri = """
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SELECT ?name ?uri
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SELECT ?name ?wikimedica_uri
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WHERE {
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?el rdfs:label ?name .
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?el rdfs:isDefinedBy ?uri
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?el rdfs:isDefinedBy ?wikimedica_uri
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}
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"""
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@ -41,10 +42,11 @@ for entity in entitys_dic:
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# Pre-traitment on name
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entity['name'] = (entity['name'].split("(")[0]).strip()
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name = entity['name']
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wikimedica_uri = entity['wikimedica_uri']
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print()
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print("="*10 + " " + name + " " + "="*10)
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print(entity['uri'])
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print(wikimedica_uri)
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# use Wikidata_id property
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request_prop_Wikidata_id = """
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@ -56,7 +58,7 @@ for entity in entitys_dic:
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""".format(PREFIX_PROPERTY)
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prop_Wikidata_id = wikimedica.request(
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entity['uri'],
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wikimedica_uri,
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request_prop_Wikidata_id
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)
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@ -85,10 +87,14 @@ for entity in entitys_dic:
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if len(list_wikidata_pages_uri) == 1:
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nb_align_by_name = nb_align_by_name + 1
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wikidata_uri = list_wikidata_pages_uri[0]
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entity['wikidata_id'] = rdflib.term.URIRef(wikidata_uri)
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entity['wikidata_id'] = (
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list_wikidata_pages_uri[0]['entity']['value']
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).split("/")[-1]
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print("align with 'name', 1 response")
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print(wikidata_uri['entity']['value'])
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print(entity['wikidata_id'])
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elif len(list_wikidata_pages_uri) > 1:
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nb_multi_align_possibility = nb_multi_align_possibility + 1
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print("align with 'name', multi response")
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@ -101,3 +107,8 @@ print("nb align by name : ", nb_align_by_name)
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print("nb multi align possibility : ", nb_multi_align_possibility)
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print("nb no align : ", nb_wikimedica_entity -
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nb_align_by_property - nb_align_by_name)
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# export result in file
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with open("./data/alignment_result.json", "w") as result_file:
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json_content = json.dumps(entitys_dic, sort_keys=True, indent=4)
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result_file.write(json_content)
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@ -0,0 +1,495 @@
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[
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{
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"name": "Diminution du niveau de perception visuelle",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Diminution_du_niveau_de_perception_visuelle"
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},
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{
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"name": "Psoas",
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"wikidata_id": "Q2042809",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Psoas_-28signe-29"
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},
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{
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"name": "Selles acholiques",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Selles_acholiques"
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},
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{
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"name": "Allodynie",
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"wikidata_id": "Q1888634",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Allodynie"
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},
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{
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"name": "Gingivorrhagie",
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"wikidata_id": "Q4925918",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Gingivorrhagie"
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},
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{
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"name": "Becker",
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"wikidata_id": "Q2484592",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Becker_-28signe-29"
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},
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{
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"name": "Acrocyanose",
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"wikidata_id": "Q202283",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acrocyanose"
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},
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{
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"name": "Tirage",
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"wikidata_id": "Q3529328",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tirage"
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},
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{
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"name": "H\u00e9moptysies",
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"wikidata_id": "Q647099",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/H\u00e9moptysies"
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},
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{
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"name": "Ataxie",
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"wikidata_id": "Q213373",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ataxie_-28signe_clinique-29"
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},
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{
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"name": "Paralysie flasque",
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"wikidata_id": "Q5456583",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Paralysie_flasque"
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},
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{
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"name": "N\u00e9crose acrale",
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"wikidata_id": "Q4675039",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/N\u00e9crose_acrale_-28signe-29"
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},
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{
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"name": "Fi\u00e8vre",
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"wikidata_id": "Q38933",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Fi\u00e8vre"
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},
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{
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"name": "Embolie pulmonaire",
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"wikidata_id": "Q220570",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Embolie_pulmonaire"
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},
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{
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"name": "Constipation",
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"wikidata_id": "Q178436",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Constipation_-28sympt\u00f4me-29"
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},
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{
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"name": "Souffle art\u00e9riel",
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"wikidata_id": "Q3491504",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Souffle_art\u00e9riel"
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},
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{
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"name": "Dipl\u00e9gie",
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"wikidata_id": "Q1097302",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Dipl\u00e9gie"
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},
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{
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"name": "Hypertonie",
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"wikidata_id": "Q574942",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypertonie"
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},
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{
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"name": "Obturateur",
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"wikidata_id": "Q7075571",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Obturateur_-28signe-29"
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},
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{
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"name": "Acouph\u00e8ne",
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"wikidata_id": "Q192309",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acouph\u00e8ne"
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},
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{
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"name": "D\u00e9lirium",
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"wikidata_id": "Q160796",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9lirium"
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},
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{
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"name": "Tachycardie",
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"wikidata_id": "Q209583",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tachycardie"
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},
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{
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"name": "Agrammatisme",
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"wikidata_id": "Q2423084",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Agrammatisme"
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},
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{
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"name": "Bezold-Jarisch",
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"wikidata_id": "Q854434",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Bezold-2DJarisch_-28r\u00e9flexe-29"
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},
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{
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"name": "Tiroir ant\u00e9rieur du genou",
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"wikidata_id": "Q1277600",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tiroir_ant\u00e9rieur_du_genou_-28test-29"
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},
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{
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"name": "D\u00e9fense abdominale involontaire",
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"wikidata_id": "Q336216",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9fense_abdominale_involontaire"
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},
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{
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"name": "Alexithymie",
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"wikidata_id": "Q1129046",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Alexithymie"
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},
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{
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"name": "Ondes X exag\u00e9r\u00e9es",
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"wikidata_id": "Q5503705",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ondes_X_exag\u00e9r\u00e9es"
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},
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{
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"name": "Alogie",
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"wikidata_id": "Q1484024",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Alogie"
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},
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{
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"name": "Avolition",
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"wikidata_id": "Q609066",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Avolition"
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},
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{
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"name": "Brown",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Brown_-28signe_clinique-29"
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},
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{
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"name": "Respiration agonale",
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"wikidata_id": "Q1747437",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Respiration_agonale"
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},
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{
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"name": "Troisi\u00e8me bruit cardiaque",
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"wikidata_id": "Q7785063",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Troisi\u00e8me_bruit_cardiaque"
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},
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{
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"name": "Syncope",
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"wikidata_id": "Q180007",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Syncope"
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},
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{
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"name": "Exsudat",
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"wikidata_id": "Q1139400",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Exsudat"
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},
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{
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"name": "Imp\u00e9tigo non-bulleux",
|
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"wikidata_id": "Q28971",
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Imp\u00e9tigo_non-2Dbulleux"
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},
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{
|
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"name": "Hypotonie",
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"wikidata_id": "Q1753547",
|
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypotonie_-28signe_clinique-29"
|
||||
},
|
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{
|
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"name": "Pupilles d'Argyll-Robertson",
|
||||
"wikidata_id": "Q652568",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Pupilles_d-27Argyll-2DRobertson"
|
||||
},
|
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{
|
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"name": "Tachypn\u00e9e",
|
||||
"wikidata_id": "Q570920",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tachypn\u00e9e"
|
||||
},
|
||||
{
|
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"name": "Signe de Ballance",
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"wikidata_id": "Q4851424",
|
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Signe_de_Ballance"
|
||||
},
|
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{
|
||||
"name": "Agueusie",
|
||||
"wikidata_id": "Q606216",
|
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"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Agueusie_-28sympt\u00f4me-29"
|
||||
},
|
||||
{
|
||||
"name": "Moodley",
|
||||
"wikidata_id": "Q649122",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Moodley_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "D\u00e9cortication",
|
||||
"wikidata_id": "Q1938321",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9cortication"
|
||||
},
|
||||
{
|
||||
"name": "Allen",
|
||||
"wikidata_id": "Q265634",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Allen_-28test-29"
|
||||
},
|
||||
{
|
||||
"name": "Rovsing",
|
||||
"wikidata_id": "Q2003715",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Rovsing_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Ast\u00e9rixis",
|
||||
"wikidata_id": "Q748444",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ast\u00e9rixis"
|
||||
},
|
||||
{
|
||||
"name": "Transsudat",
|
||||
"wikidata_id": "Q498752",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Transsudat"
|
||||
},
|
||||
{
|
||||
"name": "Test \u00e0 la toux",
|
||||
"wikidata_id": "Q2500975",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Test_\u00e0_la_toux"
|
||||
},
|
||||
{
|
||||
"name": "Thorax en tonneau",
|
||||
"wikidata_id": "Q1531933",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Thorax_en_tonneau"
|
||||
},
|
||||
{
|
||||
"name": "Ath\u00e9tose",
|
||||
"wikidata_id": "Q755524",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ath\u00e9tose"
|
||||
},
|
||||
{
|
||||
"name": "Adynamie",
|
||||
"wikidata_id": "Q380203",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Adynamie"
|
||||
},
|
||||
{
|
||||
"name": "Aaron",
|
||||
"wikidata_id": "Q4661777",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aaron_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Asth\u00e9nie",
|
||||
"wikidata_id": "Q633403",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Asth\u00e9nie"
|
||||
},
|
||||
{
|
||||
"name": "Anxi\u00e9t\u00e9",
|
||||
"wikidata_id": "Q154430",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anxi\u00e9t\u00e9"
|
||||
},
|
||||
{
|
||||
"name": "Tripl\u00e9gie",
|
||||
"wikidata_id": "Q7843546",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tripl\u00e9gie"
|
||||
},
|
||||
{
|
||||
"name": "Absence de perception visuelle",
|
||||
"wikidata_id": "Q737460",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Absence_de_perception_visuelle"
|
||||
},
|
||||
{
|
||||
"name": "Aphonie",
|
||||
"wikidata_id": "Q514686",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aphonie"
|
||||
},
|
||||
{
|
||||
"name": "Apyrexie",
|
||||
"wikidata_id": "Q2859076",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Apyrexie"
|
||||
},
|
||||
{
|
||||
"name": "Echolalie",
|
||||
"wikidata_id": "Q937353",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Echolalie"
|
||||
},
|
||||
{
|
||||
"name": "Copropraxie",
|
||||
"wikidata_id": "Q1428295",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Copropraxie"
|
||||
},
|
||||
{
|
||||
"name": "McBurney",
|
||||
"wikidata_id": "Q1253803",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/McBurney_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Vision floue",
|
||||
"wikidata_id": "Q4930803",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Vision_floue"
|
||||
},
|
||||
{
|
||||
"name": "Beeturia",
|
||||
"wikidata_id": "Q4880222",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Beeturia"
|
||||
},
|
||||
{
|
||||
"name": "Angor animi",
|
||||
"wikidata_id": "Q4763844",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Angor_animi"
|
||||
},
|
||||
{
|
||||
"name": "Comportement automatique",
|
||||
"wikidata_id": "Q19595989",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Comportement_automatique"
|
||||
},
|
||||
{
|
||||
"name": "Toux",
|
||||
"wikidata_id": "Q35805",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Toux"
|
||||
},
|
||||
{
|
||||
"name": "Barclay",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Barclay_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Adson",
|
||||
"wikidata_id": "Q378580",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Adson_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Douleur pleur\u00e9tique",
|
||||
"wikidata_id": "Q55998",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Douleur_pleur\u00e9tique"
|
||||
},
|
||||
{
|
||||
"name": "Nystagmus",
|
||||
"wikidata_id": "Q220989",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Nystagmus"
|
||||
},
|
||||
{
|
||||
"name": "Anorexie",
|
||||
"wikidata_id": "Q254327",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anorexie_-28sympt\u00f4me-29"
|
||||
},
|
||||
{
|
||||
"name": "Anisocorie",
|
||||
"wikidata_id": "Q521953",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anisocorie"
|
||||
},
|
||||
{
|
||||
"name": "Anasarque",
|
||||
"wikidata_id": "Q486485",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anasarque"
|
||||
},
|
||||
{
|
||||
"name": "Lignes de Beau",
|
||||
"wikidata_id": "Q4877328",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Lignes_de_Beau"
|
||||
},
|
||||
{
|
||||
"name": "Ashrafian",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ashrafian_-28signe_clinique-29"
|
||||
},
|
||||
{
|
||||
"name": "N\u0153uds de Bouchard",
|
||||
"wikidata_id": "Q2520898",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/N\u0153uds_de_Bouchard"
|
||||
},
|
||||
{
|
||||
"name": "Boas",
|
||||
"wikidata_id": "Q4931474",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Boas_-28signe-29"
|
||||
},
|
||||
{
|
||||
"name": "Dyspn\u00e9e",
|
||||
"wikidata_id": "Q188008",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Dyspn\u00e9e"
|
||||
},
|
||||
{
|
||||
"name": "Abarognosie",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Abarognosie"
|
||||
},
|
||||
{
|
||||
"name": "Endocardite",
|
||||
"wikidata_id": "Q82504",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Endocardite"
|
||||
},
|
||||
{
|
||||
"name": "Fasciite n\u00e9crosante",
|
||||
"wikidata_id": "Q1145674",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Fasciite_n\u00e9crosante"
|
||||
},
|
||||
{
|
||||
"name": "La belle indiff\u00e9rence",
|
||||
"wikidata_id": "Q9347500",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/La_belle_indiff\u00e9rence"
|
||||
},
|
||||
{
|
||||
"name": "D\u00e9c\u00e9r\u00e9bration",
|
||||
"wikidata_id": "Q3043006",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9c\u00e9r\u00e9bration"
|
||||
},
|
||||
{
|
||||
"name": "Man\u0153uvre d'Osler",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Man\u0153uvre_d-27Osler"
|
||||
},
|
||||
{
|
||||
"name": "Aspermie",
|
||||
"wikidata_id": "Q736599",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aspermie"
|
||||
},
|
||||
{
|
||||
"name": "Pertes sanguines en fin de grossesse",
|
||||
"wikidata_id": "Q184788",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Pertes_sanguines_en_fin_de_grossesse"
|
||||
},
|
||||
{
|
||||
"name": "Bradycardie",
|
||||
"wikidata_id": "Q217111",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Bradycardie"
|
||||
},
|
||||
{
|
||||
"name": "Mydriase",
|
||||
"wikidata_id": "Q1128283",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Mydriase"
|
||||
},
|
||||
{
|
||||
"name": "Arthralgie",
|
||||
"wikidata_id": "Q683498",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Arthralgie"
|
||||
},
|
||||
{
|
||||
"name": "Douleur osseuse",
|
||||
"wikidata_id": "Q848085",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Douleur_osseuse"
|
||||
},
|
||||
{
|
||||
"name": "Folliculite bact\u00e9rienne",
|
||||
"wikidata_id": "Q942755",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Folliculite_bact\u00e9rienne"
|
||||
},
|
||||
{
|
||||
"name": "Hypotension",
|
||||
"wikidata_id": "Q275419",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypotension"
|
||||
},
|
||||
{
|
||||
"name": "Abrasion",
|
||||
"wikidata_id": "Q247701",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Abrasion"
|
||||
},
|
||||
{
|
||||
"name": "Acalculie",
|
||||
"wikidata_id": "Q415556",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acalculie"
|
||||
},
|
||||
{
|
||||
"name": "Hyperthermie",
|
||||
"wikidata_id": "Q242165",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hyperthermie"
|
||||
},
|
||||
{
|
||||
"name": "Souffle d'Austin Flint",
|
||||
"wikidata_id": "Q780829",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Souffle_d-27Austin_Flint"
|
||||
},
|
||||
{
|
||||
"name": "Colpitis macularis",
|
||||
"wikidata_id": "Q7622511",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Colpitis_macularis"
|
||||
},
|
||||
{
|
||||
"name": "Insuffisance cardiaque",
|
||||
"wikidata_id": "Q181754",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Insuffisance_cardiaque"
|
||||
},
|
||||
{
|
||||
"name": "Ecthyma",
|
||||
"wikidata_id": "Q470701",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ecthyma"
|
||||
},
|
||||
{
|
||||
"name": "Lipothymie",
|
||||
"wikidata_id": "Q18054140",
|
||||
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Lipothymie"
|
||||
}
|
||||
]
|
||||
|
|
@ -0,0 +1,89 @@
|
|||
#!/usr/bin/env python
|
||||
from fetch import wikidata
|
||||
from neo4j import GraphDatabase
|
||||
|
||||
|
||||
NEO4J_URI = "bolt://localhost:7687"
|
||||
NEO4J_USR = "neo4j"
|
||||
NEO4J_PSW = "test"
|
||||
|
||||
# Conection with Neo4j
|
||||
driver = GraphDatabase.driver(NEO4J_URI, auth=(NEO4J_USR, NEO4J_PSW))
|
||||
|
||||
|
||||
|
||||
def define_link_from_type(link_id):
|
||||
"""
|
||||
Define typy of link from ID
|
||||
|
||||
:param link_id: id of link
|
||||
:return: type corresponding
|
||||
"""
|
||||
if link_id in ["P780","P1542"]:
|
||||
return "Sign_symsymptoms"
|
||||
elif link_id == "P5642":
|
||||
return "Risk_factor"
|
||||
else:
|
||||
raise Exception("Error : unknow link id: " + link_id)
|
||||
|
||||
|
||||
|
||||
# Create indexes
|
||||
with driver.session() as session:
|
||||
session.run("CREATE INDEX ON :Disease(id);")
|
||||
session.run("CREATE INDEX ON :Sign_symsymptoms(id);")
|
||||
session.run("CREATE INDEX ON :Risk_factor(id);")
|
||||
|
||||
# Get all diseases, links, symptoms
|
||||
request_disease_links = (wikidata.request("""
|
||||
SELECT ?maladie ?maladieLabel ?link ?linkLabel ?signe_symptome ?signe_symptomeLabel
|
||||
WHERE {
|
||||
?maladie ?link ?signe_symptome.
|
||||
SERVICE wikibase:label { bd:serviceParam wikibase:language "fr"}.
|
||||
VALUES ?link {wdt:P780 wdt:p1542 wdt:P5642}
|
||||
}
|
||||
ORDER BY ?maladie
|
||||
"""
|
||||
))['results']['bindings']
|
||||
|
||||
for link in request_disease_links:
|
||||
disease_id = link["maladie"]["value"].split("/")[-1]
|
||||
disease_label = link["maladieLabel"]["value"].lower()
|
||||
disease_type = "Disease"
|
||||
|
||||
link_id = link["link"]["value"].split("/")[-1]
|
||||
link_label = link["linkLabel"]["value"].lower()
|
||||
link_type = "link_"+define_link_from_type(link_id)
|
||||
|
||||
signe_symptome_id = link["signe_symptome"]["value"].split("/")[-1]
|
||||
signe_symptome_label = link["signe_symptomeLabel"]["value"].split("/")[-1].lower()
|
||||
signe_symptome_type = define_link_from_type(link_id)
|
||||
|
||||
with driver.session() as session:
|
||||
# add dieadiseases
|
||||
session.run(
|
||||
"MERGE (d:" + disease_type + " {id:$disease_id, label:$disease_label})",
|
||||
disease_id=disease_id,
|
||||
disease_label=disease_label,
|
||||
)
|
||||
|
||||
# add symptoms
|
||||
session.run(
|
||||
"MERGE (s:" + signe_symptome_type + " {id:$signe_symptome_id, label:$signe_symptome_label})",
|
||||
signe_symptome_id=signe_symptome_id,
|
||||
signe_symptome_label=signe_symptome_label,
|
||||
)
|
||||
|
||||
# add link
|
||||
session.run(
|
||||
"MATCH (d:" + disease_type + " {id:$disease_id})"
|
||||
"MATCH (s:" + signe_symptome_type + " {id:$signe_symptome_id})"
|
||||
"MERGE (d)-[l:" + link_type + " {id:$link_id, label:$link_label}]->(s)",
|
||||
link_id=link_id,
|
||||
link_label=link_label,
|
||||
disease_id=disease_id,
|
||||
signe_symptome_id=signe_symptome_id
|
||||
)
|
||||
|
||||
# Close Neo4j connection
|
||||
driver.close()
|
||||
Loading…
Reference in New Issue