matteo/wikimedica-disease-search
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wikimedica-disease-search
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Merge branch 'master' of gitlab.com:matteodelabre/wikimedica-disease-search

This commit is contained in:
Mattéo Delabre 2019-11-27 00:49:37 -05:00
parent 70b3f00a54 0d149bc9e7
commit 95d1fd31cc
Signed by: matteo
GPG Key ID: AE3FBD02DC583ABB
3 changed files with 602 additions and 7 deletions
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25
data/alignement.py
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@ -1,6 +1,7 @@
from fetch import wikidata, wikimedica from fetch import wikidata, wikimedica
import requests import requests
import rdflib import rdflib
import json
SIGNES_ET_SYMPTOMES_WIKIMEDICA_PAGE = ( SIGNES_ET_SYMPTOMES_WIKIMEDICA_PAGE = (
'http://wikimedi.ca/wiki/Sp%C3%A9cial:' 'http://wikimedi.ca/wiki/Sp%C3%A9cial:'
@ -22,10 +23,10 @@ nb_multi_align_possibility = 0
# get name and URI from WikiMedica # get name and URI from WikiMedica
request_name_uri = """ request_name_uri = """
SELECT ?name ?uri SELECT ?name ?wikimedica_uri
WHERE { WHERE {
?el rdfs:label ?name . ?el rdfs:label ?name .
?el rdfs:isDefinedBy ?uri ?el rdfs:isDefinedBy ?wikimedica_uri
} }
""" """
@ -41,10 +42,11 @@ for entity in entitys_dic:
# Pre-traitment on name # Pre-traitment on name
entity['name'] = (entity['name'].split("(")[0]).strip() entity['name'] = (entity['name'].split("(")[0]).strip()
name = entity['name'] name = entity['name']
wikimedica_uri = entity['wikimedica_uri']
print() print()
print("="*10 + " " + name + " " + "="*10) print("="*10 + " " + name + " " + "="*10)
print(entity['uri']) print(wikimedica_uri)
# use Wikidata_id property # use Wikidata_id property
request_prop_Wikidata_id = """ request_prop_Wikidata_id = """
@ -56,7 +58,7 @@ for entity in entitys_dic:
""".format(PREFIX_PROPERTY) """.format(PREFIX_PROPERTY)
prop_Wikidata_id = wikimedica.request( prop_Wikidata_id = wikimedica.request(
entity['uri'], wikimedica_uri,
request_prop_Wikidata_id request_prop_Wikidata_id
) )
@ -85,10 +87,14 @@ for entity in entitys_dic:
if len(list_wikidata_pages_uri) == 1: if len(list_wikidata_pages_uri) == 1:
nb_align_by_name = nb_align_by_name + 1 nb_align_by_name = nb_align_by_name + 1
wikidata_uri = list_wikidata_pages_uri[0]
entity['wikidata_id'] = rdflib.term.URIRef(wikidata_uri) entity['wikidata_id'] = (
list_wikidata_pages_uri[0]['entity']['value']
).split("/")[-1]
print("align with 'name', 1 response") print("align with 'name', 1 response")
print(wikidata_uri['entity']['value']) print(entity['wikidata_id'])
elif len(list_wikidata_pages_uri) > 1: elif len(list_wikidata_pages_uri) > 1:
nb_multi_align_possibility = nb_multi_align_possibility + 1 nb_multi_align_possibility = nb_multi_align_possibility + 1
print("align with 'name', multi response") print("align with 'name', multi response")
@ -101,3 +107,8 @@ print("nb align by name : ", nb_align_by_name)
print("nb multi align possibility : ", nb_multi_align_possibility) print("nb multi align possibility : ", nb_multi_align_possibility)
print("nb no align : ", nb_wikimedica_entity - print("nb no align : ", nb_wikimedica_entity -
nb_align_by_property - nb_align_by_name) nb_align_by_property - nb_align_by_name)
# export result in file
with open("./data/alignment_result.json", "w") as result_file:
json_content = json.dumps(entitys_dic, sort_keys=True, indent=4)
result_file.write(json_content)

495
data/alignment_result.json Normal file
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@ -0,0 +1,495 @@
[
{
"name": "Diminution du niveau de perception visuelle",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Diminution_du_niveau_de_perception_visuelle"
},
{
"name": "Psoas",
"wikidata_id": "Q2042809",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Psoas_-28signe-29"
},
{
"name": "Selles acholiques",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Selles_acholiques"
},
{
"name": "Allodynie",
"wikidata_id": "Q1888634",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Allodynie"
},
{
"name": "Gingivorrhagie",
"wikidata_id": "Q4925918",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Gingivorrhagie"
},
{
"name": "Becker",
"wikidata_id": "Q2484592",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Becker_-28signe-29"
},
{
"name": "Acrocyanose",
"wikidata_id": "Q202283",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acrocyanose"
},
{
"name": "Tirage",
"wikidata_id": "Q3529328",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tirage"
},
{
"name": "H\u00e9moptysies",
"wikidata_id": "Q647099",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/H\u00e9moptysies"
},
{
"name": "Ataxie",
"wikidata_id": "Q213373",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ataxie_-28signe_clinique-29"
},
{
"name": "Paralysie flasque",
"wikidata_id": "Q5456583",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Paralysie_flasque"
},
{
"name": "N\u00e9crose acrale",
"wikidata_id": "Q4675039",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/N\u00e9crose_acrale_-28signe-29"
},
{
"name": "Fi\u00e8vre",
"wikidata_id": "Q38933",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Fi\u00e8vre"
},
{
"name": "Embolie pulmonaire",
"wikidata_id": "Q220570",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Embolie_pulmonaire"
},
{
"name": "Constipation",
"wikidata_id": "Q178436",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Constipation_-28sympt\u00f4me-29"
},
{
"name": "Souffle art\u00e9riel",
"wikidata_id": "Q3491504",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Souffle_art\u00e9riel"
},
{
"name": "Dipl\u00e9gie",
"wikidata_id": "Q1097302",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Dipl\u00e9gie"
},
{
"name": "Hypertonie",
"wikidata_id": "Q574942",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypertonie"
},
{
"name": "Obturateur",
"wikidata_id": "Q7075571",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Obturateur_-28signe-29"
},
{
"name": "Acouph\u00e8ne",
"wikidata_id": "Q192309",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acouph\u00e8ne"
},
{
"name": "D\u00e9lirium",
"wikidata_id": "Q160796",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9lirium"
},
{
"name": "Tachycardie",
"wikidata_id": "Q209583",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tachycardie"
},
{
"name": "Agrammatisme",
"wikidata_id": "Q2423084",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Agrammatisme"
},
{
"name": "Bezold-Jarisch",
"wikidata_id": "Q854434",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Bezold-2DJarisch_-28r\u00e9flexe-29"
},
{
"name": "Tiroir ant\u00e9rieur du genou",
"wikidata_id": "Q1277600",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tiroir_ant\u00e9rieur_du_genou_-28test-29"
},
{
"name": "D\u00e9fense abdominale involontaire",
"wikidata_id": "Q336216",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9fense_abdominale_involontaire"
},
{
"name": "Alexithymie",
"wikidata_id": "Q1129046",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Alexithymie"
},
{
"name": "Ondes X exag\u00e9r\u00e9es",
"wikidata_id": "Q5503705",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ondes_X_exag\u00e9r\u00e9es"
},
{
"name": "Alogie",
"wikidata_id": "Q1484024",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Alogie"
},
{
"name": "Avolition",
"wikidata_id": "Q609066",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Avolition"
},
{
"name": "Brown",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Brown_-28signe_clinique-29"
},
{
"name": "Respiration agonale",
"wikidata_id": "Q1747437",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Respiration_agonale"
},
{
"name": "Troisi\u00e8me bruit cardiaque",
"wikidata_id": "Q7785063",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Troisi\u00e8me_bruit_cardiaque"
},
{
"name": "Syncope",
"wikidata_id": "Q180007",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Syncope"
},
{
"name": "Exsudat",
"wikidata_id": "Q1139400",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Exsudat"
},
{
"name": "Imp\u00e9tigo non-bulleux",
"wikidata_id": "Q28971",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Imp\u00e9tigo_non-2Dbulleux"
},
{
"name": "Hypotonie",
"wikidata_id": "Q1753547",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypotonie_-28signe_clinique-29"
},
{
"name": "Pupilles d'Argyll-Robertson",
"wikidata_id": "Q652568",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Pupilles_d-27Argyll-2DRobertson"
},
{
"name": "Tachypn\u00e9e",
"wikidata_id": "Q570920",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tachypn\u00e9e"
},
{
"name": "Signe de Ballance",
"wikidata_id": "Q4851424",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Signe_de_Ballance"
},
{
"name": "Agueusie",
"wikidata_id": "Q606216",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Agueusie_-28sympt\u00f4me-29"
},
{
"name": "Moodley",
"wikidata_id": "Q649122",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Moodley_-28signe-29"
},
{
"name": "D\u00e9cortication",
"wikidata_id": "Q1938321",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9cortication"
},
{
"name": "Allen",
"wikidata_id": "Q265634",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Allen_-28test-29"
},
{
"name": "Rovsing",
"wikidata_id": "Q2003715",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Rovsing_-28signe-29"
},
{
"name": "Ast\u00e9rixis",
"wikidata_id": "Q748444",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ast\u00e9rixis"
},
{
"name": "Transsudat",
"wikidata_id": "Q498752",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Transsudat"
},
{
"name": "Test \u00e0 la toux",
"wikidata_id": "Q2500975",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Test_\u00e0_la_toux"
},
{
"name": "Thorax en tonneau",
"wikidata_id": "Q1531933",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Thorax_en_tonneau"
},
{
"name": "Ath\u00e9tose",
"wikidata_id": "Q755524",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ath\u00e9tose"
},
{
"name": "Adynamie",
"wikidata_id": "Q380203",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Adynamie"
},
{
"name": "Aaron",
"wikidata_id": "Q4661777",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aaron_-28signe-29"
},
{
"name": "Asth\u00e9nie",
"wikidata_id": "Q633403",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Asth\u00e9nie"
},
{
"name": "Anxi\u00e9t\u00e9",
"wikidata_id": "Q154430",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anxi\u00e9t\u00e9"
},
{
"name": "Tripl\u00e9gie",
"wikidata_id": "Q7843546",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Tripl\u00e9gie"
},
{
"name": "Absence de perception visuelle",
"wikidata_id": "Q737460",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Absence_de_perception_visuelle"
},
{
"name": "Aphonie",
"wikidata_id": "Q514686",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aphonie"
},
{
"name": "Apyrexie",
"wikidata_id": "Q2859076",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Apyrexie"
},
{
"name": "Echolalie",
"wikidata_id": "Q937353",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Echolalie"
},
{
"name": "Copropraxie",
"wikidata_id": "Q1428295",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Copropraxie"
},
{
"name": "McBurney",
"wikidata_id": "Q1253803",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/McBurney_-28signe-29"
},
{
"name": "Vision floue",
"wikidata_id": "Q4930803",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Vision_floue"
},
{
"name": "Beeturia",
"wikidata_id": "Q4880222",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Beeturia"
},
{
"name": "Angor animi",
"wikidata_id": "Q4763844",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Angor_animi"
},
{
"name": "Comportement automatique",
"wikidata_id": "Q19595989",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Comportement_automatique"
},
{
"name": "Toux",
"wikidata_id": "Q35805",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Toux"
},
{
"name": "Barclay",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Barclay_-28signe-29"
},
{
"name": "Adson",
"wikidata_id": "Q378580",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Adson_-28signe-29"
},
{
"name": "Douleur pleur\u00e9tique",
"wikidata_id": "Q55998",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Douleur_pleur\u00e9tique"
},
{
"name": "Nystagmus",
"wikidata_id": "Q220989",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Nystagmus"
},
{
"name": "Anorexie",
"wikidata_id": "Q254327",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anorexie_-28sympt\u00f4me-29"
},
{
"name": "Anisocorie",
"wikidata_id": "Q521953",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anisocorie"
},
{
"name": "Anasarque",
"wikidata_id": "Q486485",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Anasarque"
},
{
"name": "Lignes de Beau",
"wikidata_id": "Q4877328",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Lignes_de_Beau"
},
{
"name": "Ashrafian",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ashrafian_-28signe_clinique-29"
},
{
"name": "N\u0153uds de Bouchard",
"wikidata_id": "Q2520898",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/N\u0153uds_de_Bouchard"
},
{
"name": "Boas",
"wikidata_id": "Q4931474",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Boas_-28signe-29"
},
{
"name": "Dyspn\u00e9e",
"wikidata_id": "Q188008",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Dyspn\u00e9e"
},
{
"name": "Abarognosie",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Abarognosie"
},
{
"name": "Endocardite",
"wikidata_id": "Q82504",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Endocardite"
},
{
"name": "Fasciite n\u00e9crosante",
"wikidata_id": "Q1145674",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Fasciite_n\u00e9crosante"
},
{
"name": "La belle indiff\u00e9rence",
"wikidata_id": "Q9347500",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/La_belle_indiff\u00e9rence"
},
{
"name": "D\u00e9c\u00e9r\u00e9bration",
"wikidata_id": "Q3043006",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/D\u00e9c\u00e9r\u00e9bration"
},
{
"name": "Man\u0153uvre d'Osler",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Man\u0153uvre_d-27Osler"
},
{
"name": "Aspermie",
"wikidata_id": "Q736599",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Aspermie"
},
{
"name": "Pertes sanguines en fin de grossesse",
"wikidata_id": "Q184788",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Pertes_sanguines_en_fin_de_grossesse"
},
{
"name": "Bradycardie",
"wikidata_id": "Q217111",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Bradycardie"
},
{
"name": "Mydriase",
"wikidata_id": "Q1128283",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Mydriase"
},
{
"name": "Arthralgie",
"wikidata_id": "Q683498",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Arthralgie"
},
{
"name": "Douleur osseuse",
"wikidata_id": "Q848085",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Douleur_osseuse"
},
{
"name": "Folliculite bact\u00e9rienne",
"wikidata_id": "Q942755",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Folliculite_bact\u00e9rienne"
},
{
"name": "Hypotension",
"wikidata_id": "Q275419",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hypotension"
},
{
"name": "Abrasion",
"wikidata_id": "Q247701",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Abrasion"
},
{
"name": "Acalculie",
"wikidata_id": "Q415556",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Acalculie"
},
{
"name": "Hyperthermie",
"wikidata_id": "Q242165",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Hyperthermie"
},
{
"name": "Souffle d'Austin Flint",
"wikidata_id": "Q780829",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Souffle_d-27Austin_Flint"
},
{
"name": "Colpitis macularis",
"wikidata_id": "Q7622511",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Colpitis_macularis"
},
{
"name": "Insuffisance cardiaque",
"wikidata_id": "Q181754",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Insuffisance_cardiaque"
},
{
"name": "Ecthyma",
"wikidata_id": "Q470701",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Ecthyma"
},
{
"name": "Lipothymie",
"wikidata_id": "Q18054140",
"wikimedica_uri": "https://wikimedi.ca/wiki/Special:ExportRDF/Lipothymie"
}
]

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data/build_graph.py Executable file
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#!/usr/bin/env python
from fetch import wikidata
from neo4j import GraphDatabase
NEO4J_URI = "bolt://localhost:7687"
NEO4J_USR = "neo4j"
NEO4J_PSW = "test"
# Conection with Neo4j
driver = GraphDatabase.driver(NEO4J_URI, auth=(NEO4J_USR, NEO4J_PSW))
def define_link_from_type(link_id):
"""
Define typy of link from ID
:param link_id: id of link
:return: type corresponding
"""
if link_id in ["P780","P1542"]:
return "Sign_symsymptoms"
elif link_id == "P5642":
return "Risk_factor"
else:
raise Exception("Error : unknow link id: " + link_id)
# Create indexes
with driver.session() as session:
session.run("CREATE INDEX ON :Disease(id);")
session.run("CREATE INDEX ON :Sign_symsymptoms(id);")
session.run("CREATE INDEX ON :Risk_factor(id);")
# Get all diseases, links, symptoms
request_disease_links = (wikidata.request("""
SELECT ?maladie ?maladieLabel ?link ?linkLabel ?signe_symptome ?signe_symptomeLabel
WHERE {
?maladie ?link ?signe_symptome.
SERVICE wikibase:label { bd:serviceParam wikibase:language "fr"}.
VALUES ?link {wdt:P780 wdt:p1542 wdt:P5642}
}
ORDER BY ?maladie
"""
))['results']['bindings']
for link in request_disease_links:
disease_id = link["maladie"]["value"].split("/")[-1]
disease_label = link["maladieLabel"]["value"].lower()
disease_type = "Disease"
link_id = link["link"]["value"].split("/")[-1]
link_label = link["linkLabel"]["value"].lower()
link_type = "link_"+define_link_from_type(link_id)
signe_symptome_id = link["signe_symptome"]["value"].split("/")[-1]
signe_symptome_label = link["signe_symptomeLabel"]["value"].split("/")[-1].lower()
signe_symptome_type = define_link_from_type(link_id)
with driver.session() as session:
# add dieadiseases
session.run(
"MERGE (d:" + disease_type + " {id:$disease_id, label:$disease_label})",
disease_id=disease_id,
disease_label=disease_label,
)
# add symptoms
session.run(
"MERGE (s:" + signe_symptome_type + " {id:$signe_symptome_id, label:$signe_symptome_label})",
signe_symptome_id=signe_symptome_id,
signe_symptome_label=signe_symptome_label,
)
# add link
session.run(
"MATCH (d:" + disease_type + " {id:$disease_id})"
"MATCH (s:" + signe_symptome_type + " {id:$signe_symptome_id})"
"MERGE (d)-[l:" + link_type + " {id:$link_id, label:$link_label}]->(s)",
link_id=link_id,
link_label=link_label,
disease_id=disease_id,
signe_symptome_id=signe_symptome_id
)
# Close Neo4j connection
driver.close()